| 陈海霞,蔡超,刘静仪,张治国,原梅,贾俊楠,孙照刚,黄海荣,高基民,李卫民.不同可变数目串联重复序列组合对中国流行结核分枝杆菌分辨力的评价研究[J].Chinese journal of Epidemiology,2017,38(6):794-799 |
| 不同可变数目串联重复序列组合对中国流行结核分枝杆菌分辨力的评价研究 |
| Discriminatory power of variable number on tandem repeats loci for genotyping Mycobacterium tuberculosis strains in China |
| Received:October 27, 2016 |
| DOI：10.3760/cma.j.issn.0254-6450.2017.06.021 |
| KeyWord: 结核分枝杆菌 可变数目串联重复序列 基因分型 分辨率 成簇率 |
| English Key Word: Mycobacterium tuberculosis Variable number of tandem repeats Enotype Discriminatory Clustered rate |
| FundProject:国家自然科学基金（81273144）；北京市自然科学基金B类重点项目（KZ201510025024）；北京市结核病临床数据和样本资源库项目（D131100005313012） |
| Author Name | Affiliation | E-mail | | Chen Haixia | Zhejiang Provincial Key Laboratory for Technology, Application of Model Organisms, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou 325035, China
National Tuberculosis Clinical Laboratory of China, Beijing Chest Hospital, Capital Medical University, Beijing 101149, China | | | Cai Chao | The Drug-resistant TB Key Laboratory of Beijing, Beijing Tuberculosis and Thoracic Tumor Research Institute, Beijing 101149, China | | | Liu Jingyi | The Drug-resistant TB Key Laboratory of Beijing, Beijing Tuberculosis and Thoracic Tumor Research Institute, Beijing 101149, China
National Tuberculosis Clinical Laboratory of China, Beijing Chest Hospital, Capital Medical University, Beijing 101149, China | | | Zhang Zhiguo | The Institute of Tuberculosis Prevention and Control of Changping District, Beijing 102200, China | | | Yuan Mei | Yuncheng City Emergency Center, Yuncheng 044000, China | | | Jia Junnan | National Tuberculosis Clinical Laboratory of China, Beijing Chest Hospital, Capital Medical University, Beijing 101149, China
Beijing Municipal Key Laboratory of Clinical Epidemiology, School of Public Health, Capital Medical University, Beijing 100069, China | | | Sun Zhaogang | National Tuberculosis Clinical Laboratory of China, Beijing Chest Hospital, Capital Medical University, Beijing 101149, China | | | Huang Hairong | National Tuberculosis Clinical Laboratory of China, Beijing Chest Hospital, Capital Medical University, Beijing 101149, China | | | Gao Jimin | Zhejiang Provincial Key Laboratory for Technology, Application of Model Organisms, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou 325035, China | jimingao64@163.com | | Li Weimin | National Tuberculosis Clinical Laboratory of China, Beijing Chest Hospital, Capital Medical University, Beijing 101149, China
Beijing Municipal Key Laboratory of Clinical Epidemiology, School of Public Health, Capital Medical University, Beijing 100069, China | lwm_18@aliyun.com |
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| Abstract: |
| 目的 在规范化的结核分枝杆菌（Mycobacterium tuberculosis，MTB）可变数目串联重复序列（variable number of tandem repeats，VNTR）基因分型的基础上，构建我国31个省（自治区、直辖市）VNTR数据库，每个省优化一套VNTR位点组合，为我国结核病预防控制策略的制定提供科学依据。方法 对2007－2008年全国结核病耐药性基线调查的4 116株MTB15位点VNTR（15-VNTR）基因分型。汉高指数（Hunter-Gaston Index，HGI）分析每个位点的分辨率。依据谱系流行特征，以分辨率高和稳定性强为原则，为各省设计一套VNTR优化组合（12-VNTR、10-VNTR、8-VNTR和5-VNTR），采用HGI和成簇率进行评价。结果 完成了涵盖率为96.36%（3 966/4 116）MTB完整15-VNTR图谱。发现QUB11b、MIRU26等7个高分辨率位点；QUB26、MIRU16、Mtub21、QUB11b在部分地区遗传稳定性差。内蒙古自治区、重庆市、黑龙江省的最优组合为10-VNTR，其他各省的最佳组合为8-VNTR。结论 VNTR数据库的建立将推动全国范围MTB传染源的追踪；各省优化VNTR组合的推出有助于当地结核病疫情的监测和群体遗传学的研究。 |
| English Abstract: |
| Objective Using the standard genotype method, variable number of tandem repeats (VNTR), we constructed a VNTR database to cover all provinces and proposed a set of optimized VNTR loci combinations for each province, in order to improve the preventive and control programs on tuberculosis, in China. Methods A total of 15 loci VNTR was used to analyze 4 116 Mycobacterium tuberculosis strains, isolated from national survey of Drug Resistant Tuberculosis, in 2007. Hunter-Gaston Index (HGI) was also used to analyze the discriminatory power of each VNTR site. A set combination of 12-VNTR, 10-VNTR, 8-VNTR and 5-VNTR was respectively constructed for each province, based on 1) epidemic characteristics of M. tuberculosis lineages in China, with high discriminatory power and genetic stability. Results Through the completed 15 loci VNTR patterns of 3 966 strains under 96.36% (3 966/4 116) coverage, we found seven high HGI loci (including QUB11b and MIRU26) as well as low stable loci (including QUB26, MIRU16, Mtub21 and QUB11b) in several areas. In all the 31 provinces, we found an optimization VNTR combination as 10-VNTR loci in Inner Mongolia, Chongqing and Heilongjiang, but with 8-VNTR combination shared in other provinces. Conclusions It is necessary to not only use the VNTR database for tracing the source of infection and cluster of M. tuberculosis in the nation but also using the set of optimized VNTR combinations in monitoring those local epidemics and M. tuberculosis (genetics in local) population. |
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