| 钟涵莹,李定辰,陈芳艳,赵静雅,许蕊,韩黎.病原真菌基因组流行病学研究进展[J].Chinese journal of Epidemiology,2022,43(6):981-986 |
| 病原真菌基因组流行病学研究进展 |
| Progress in research of genomic epidemiology of pathogenic fungi |
| Received:October 15, 2021 |
| DOI：10.3760/cma.j.cn112338-20211015-00794 |
| KeyWord: 基因组流行病学 病原真菌 全基因组测序 全基因组关联分析 |
| English Key Word: Genomic epidemiology Pathogenic fungi Whole-genome sequencing Genome-wide associated study |
| FundProject:国家自然科学基金（81971914，81772163）；辽宁省自然科学基金（20180550255） |
| Author Name | Affiliation | E-mail | | Zhong Hanying | Chinese People's Liberation Army Center for Disease Control and Prevention, Beijing 100071, China
School of Public Health, China Medical University, Shenyang 110122, China | | | Li Dingchen | Chinese People's Liberation Army Center for Disease Control and Prevention, Beijing 100071, China | | | Chen Fangyan | Chinese People's Liberation Army Center for Disease Control and Prevention, Beijing 100071, China | | | Zhao Jingya | Chinese People's Liberation Army Center for Disease Control and Prevention, Beijing 100071, China | | | Xu Rui | Chinese People's Liberation Army Center for Disease Control and Prevention, Beijing 100071, China
School of Public Health, China Medical University, Shenyang 110122, China | | | Han Li | Chinese People's Liberation Army Center for Disease Control and Prevention, Beijing 100071, China | hanlicdc@163.com |
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| Abstract: |
| 基因组流行病学研究为病原真菌的遗传进化、传播和表型研究提供了新的视角，其核心技术是全基因组测序技术和生物信息学分析，极大地弥补了传统分子分型技术的不足。通过将病原真菌的全部遗传信息和流行病学调查相结合，能够预测病原真菌的传播途径和传播风险，为制定真菌防控的公共卫生策略提供理论基础。本文将对分子流行病学、基因组流行病学的发展以及基因组流行病学在病原真菌的遗传关系、溯源及进化、耐药性以及毒力、全基因组关联分析等方面的应用进行综述，并对病原真菌基因组流行病学未来发展做出展望。 |
| English Abstract: |
| Genomic epidemiology, based on whole-genome sequencing technology and bioinformatics analysis, can make up for the shortcomings of traditional molecular typing methods and provide a novel insight for the genetic evolution and transmission of pathogenic fungi. The combination of genetic information and epidemiological methods of pathogenic fungi can predict fungi transmission routes and risks, and provide a theoretical basis for the development of public health strategies for fungi infection prevention and control. This paper summarizes the development of molecular epidemiology and genomic epidemiology, as well as the application of genomic epidemiology methods in the analyses of genetic relationship, origin, evolution, drug resistance, virulence, and genome-wide association of pathogenic fungi, and discusses the development of pathogenic fungi genomic epidemiology. |
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